Taiji: An integrated analysis pipeline

Contents:

• Compile from source
  • Install stack
  • Download Taiji source and install GHC
  • Install Taiji
• Tutorial
  • Introduction
  • How to use
  • Parallelism
  • Auto-recovery
  • Results
  • Visualize the results
• Configuration
  • Example files
  • Basic options
  • Genome Indices
• Input data format
  • ATAC-seq
  • RNA-seq
  • HiC
• Extensions
• Linux Primer
  • Linux path environment variable